APBA/ABI Joint Agri-informatics ‘Bring Your Own Data’ (BYOD) Hackathon 2026

Hackathon overview

Advances in genome sequencing technology and bioinformatics are revolutionizing crop improvement by enabling faster, more accurate, and cost-effective breeding. However, many breeding programmes across Africa continue to face significant capacity gaps in translating genomic data into actionable breeding decisions. These challenges are often linked not to data generation, but to limitations in data analysis, interpretation, and reporting.

Recognizing this gap, the African Plant Breeders Association (APBA), in partnership with the African Bioinformatics Institute (ABI), is expanding its efforts to strengthen practical genomics and bioinformatics capacity among plant breeders. This collaboration builds on the success of a recent genomics and bioinformatics data hackathon, which demonstrated strong demand for hands-on, data-driven support and resulted in tangible analytical and publication outcomes for participating researchers.

To extend the reach and impact of this approach, APBA and ABI are jointly convening the ‘APBA/ABI Agri-informatics Bring Your Own Data Hackathon’, designed to support a broader cohort of breeders and researchers in analyzing, interpreting, and reporting genomics-related datasets. The hackathon model emphasizes collaborative problem-solving, mentorship, and real-world data analysis, with the goal of accelerating the translation of genomic data into improved crop varieties and strengthening publication output across African breeding programmes.

Hackathon Dates

The hackathon will take place across 5 days.
5-9 October 2026

Skill level

Intermediate – advanced

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Language

English

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Type of training

in-person training

Venue:

Faculty of Health Sciences, University of Cape Town, South Africa (TBC)

Credential awarded:

 Hackathon certificate

Application Info

Registration

Registration opens: 
Friday, 19 June 2026

Registration closes: 
Thursday, 16 July 2026; no late applications can unfortunately be accepted

Notification date: 
30 July 2026 (TBC)

Prerequisites

  • Participants should be actively working in, or studying towards a degree in, the agricultural sector.
  • Participants should have existing datasets that they can access and bring to the workshop for hands-on analysis.
  • Participants should have basic familiarity with the Unix command line and some experience using R or Python for data analysis.

Who’s involved?

Workshop organisers: 

APBA, ABI

Workshop Trainers: 

  • Bruce Walsh
  • Réka Howard
  • Nelson Lubanga
  • Vamsi Manthena
  • Ranjana Bhattacharjee
  • Alexander Lipka

Workshop Sponsors: 

African Plant Breeders Association; African Bioinformatics Institute

Intended Audience: 

This hackathon is aimed at senior postgraduate students (MSc, PhD), postdoctoral researchers, researchers, and academic staff in the agricultural sciences who have existing biological or genomic datasets and wish to advance these data through analysis, interpretation, synthesis, and publication.

Syllabus and Tools:

Coming soon!

Learning objectives/ outcomes: 

After this hackathon participants should be able to:

 

  • Participants should be actively working in, or studying towards a degree in, the agricultural sector.
  • Participants should have existing datasets that they can access and bring to the workshop for hands-on analysis.
  • Participants should have basic familiarity with the Unix command line and some experience using R or Python for data analysis.

Programme Overview

Module 1: Experimental Design

Why is Experimental Design Important?

Presenter: Réka Howard
Date: 8 June 2026
Time: 3pm CAT

A Practical Introduction to Factorial Designs

Presenter: Réka Howard
Date: 9 June 2026
Time: 3pm CAT

Block It, Repeat It, Analyze It!

Presenter: Réka Howard
Date: 16 June 2026
Time: 3pm CAT

Module 2: Quantitative Genetics

Quantitative Genetics: An overview

Presenter: Bruce Walsh
Date: 3 July 2026
Time: 3pm CAT

Quantitative Genetics: Single trait selection

Presenter: Bruce Walsh
Date: 6 July 2026
Time: 3pm CAT

QQuantitative Genetics: Matrices and multiple trait selection

Presenter: Bruce Walsh
Date: 7 July 2026
Time: 3pm CAT

Quantitative Genetics: index selection

Presenter: Bruce Walsh
Date: 8 July 2026
Time: 3pm CAT

Module 3: Applications of Quantitative Genetics

Data QC, file formats & Conversions

Presenter: Nelson Lubanga
Date: 23 July 2026
Time: 12pm CAT
Registration Coming soon

Applications of Quantitative Genetics

Presenter: Alex Lipka
Date: 27 July 2026
Time: 4pm CAT
Registration Coming soon

Introduction to GAPIT and other R packages

Presenter: Alex Lipka
Date: 29 July 2026
Time: 4pm CAT
Registration Coming soon

Module 4: Machine Learning

Machine Learning Foundations for Genomic Prediction

Presenter: Vamsi Manthena
Date: 04 August 2026
Time: 4pm CAT
Registration Coming soon

Integrating AI into Genomic Prediction

Presenter: Vamsi Manthena
Date: 06 August 2026
Time: 4pm CAT
Registration Coming soon

Module 5: Genomic selection

Applied genomic prediction

Presenter: Nelson Lubanga
Date: 11 August 2026
Time: 12pm CAT
Registration Coming soon

Ready to Apply?

Take the next step in your bioinformatics journey with the African Bioinformatics Institute.

If you meet the application requirements, we encourage you to submit your application before the closing date. We look forward to welcoming the next cohort of researchers and professionals committed to advancing bioinformatics across Africa.